Protein Domains
Mandatory reading
- https://en.wikipedia.org/wiki/Protein_domain
- Sonnhammer_et_al-1997-Proteins-_Structure_Function_and_Bioinformatics
- Protein domain rearrangements
- SCOP_original
Slides
Videos
- Protein Domains – intro
- https://www.youtube.com/watch?v=vD57OkeDph4
- SCOP and CATH
- SCOPe tutorial
- Pfam
- Pfam Tutorial
- Assigning domains to genomes
- Domain Architecture Evolution
- Repeat Domain Evolution
- Protein interactions (mine)
- Protein Interactions
- Mass Spectrometry (mine)
- Protein Mass Spectrometry
Since we might not have enough time (since you will most likely have to answer questions), could you please go through the ppt like summary?
Please explain repeat domain again ( the video’s background is full of white noise), and the length cut-off for orphan domain.
THX.
As there are ~1000 slides to study for the upcoming exam, please provide us poor students with some form of study guide that contains the important concepts/slides to focus on for each lecture. I fear that we may get lost in less important details while studying otherwise.
Thank you kindly,
X